| 2024 |
Wilkins, Emilia C.; Loughrey, Sean; Patel, Alexa; Anesi, Judith A.; Kelly, Brendan J. |
Metagenomic Profiling Reveals Post-Kidney Transplant Urinary Microbiome Change |
preprint |
10.2139/ssrn.4831930 |
| 2023 |
Tanneti, Nikhila S; Patel, Anant K; Tan, Li Hui; Marques, Andrew D; Perera, Ranawaka A P M; Sherrill-Mix, Scott; Kelly, Brendan J; Renner, David M; Collman, Ronald G; Rodino, Kyle; Lee, Carole; Bushman, Frederic D; Cohen, Noam A; Weiss, Susan R |
Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating |
preprint |
10.1101/2023.08.24.553565 |
| 2023 |
Strelau, Katherine M.; Feuerstein-Simon, Rachel; Naseer, Nawar; Lang, Megan; Rix, Kevin; Murray, Eleanor J; Morris, Jeffrey S.; Wiebe, Douglas J.; Nelson, Hillary C.M.; Collman, Ronald G.; Rodino, Kyle G.; Bushman, Frederic D.; Kelly, Brendan J.; Cannuscio, Carolyn C. |
Variations in COVID-19 impacts by social vulnerability in Philadelphia, June 2020-December 2022 |
preprint |
10.1101/2023.01.13.23284488 |
| 2022 |
Lenz, Olivia C.; Marques, Andrew D.; Kelly, Brendan J.; Rodino, Kyle G.; Cole, Stephen D.; Perera, Ranawaka A.P.M.; Weiss, Susan R.; Bushman, Frederic D.; Lennon, Elizabeth M. |
Detection and Interspecies Comparison of SARS-CoV-2 Delta Variant (AY.3) in Feces from a Domestic Cat and Human Samples |
preprint |
10.1101/2022.01.31.478506 |
| 2022 |
Marques, Andrew D.; Sherrill-Mix, Scott; Everett, John K.; Adhikari, Hriju; Reddy, Shantan; Ellis, Julie C.; Zeliff, Haley; Greening, Sabrina S.; Cannuscio, Carolyn C.; Strelau, Katherine M.; Collman, Ronald G.; Kelly, Brendan J.; Rodino, Kyle G.; Bushman, Frederic D.; Gagne, Roderick B.; Anis, Eman |
Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania |
preprint |
10.1101/2022.02.17.22270679 |
| 2022 |
Rodino, Kyle G.; Peaper, David R.; Kelly, Brendan J.; Bushman, Frederic; Marques, Andrew; Adhikari, Hriju; Tu, Zheng Jin; Rolon, Rebecca Marrero; Westblade, Lars F.; Green, Daniel A.; Berry, Gregory J.; Wu, Fann; Annavajhala, Medini K.; Uhlemann, Anne-Catrin; Parikh, Bijal A.; McMillen, Tracy; Jani, Krupa; Babady, N. Esther; Hahn, Anne M.; Koch, Robert T.; Grubaugh, Nathan D.; Rhoads, Daniel D. |
Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1 |
preprint |
10.1101/2022.04.25.22274187 |
| 2022 |
Anderson, Thayer L; Nande, Anjalika; Merenstein, Carter; Raynor, Brinkley; Oommen, Anisha; Kelly, Brendan J; Levy, Michael Z; Hill, Alison L |
Quantifying individual-level heterogeneity in infectiousness and susceptibility through household studies |
preprint |
10.1101/2022.12.02.22281853 |
| 2021 |
Marques, Andrew D.; Sherrill-Mix, Scott; Everett, John; Reddy, Shantan; Hokama, Pascha; Roche, Aoife M.; Hwang, Young; Glascock, Abigail; Whiteside, Samantha A.; Graham-Wooten, Jevon; Khatib, Layla A.; Fitzgerald, Ayannah S.; Moustafa, Ahmed M.; Bianco, Colleen; Rajagopal, Swetha; Helton, Jenna; Deming, Regan; Denu, Lidiya; Ahmed, Azad; Kitt, Eimear; Coffin, Susan E.; Newbern, Claire; Mell, Josh Chang; Planet, Paul J.; Badjatia, Nitika; Richards, Bonnie; Wang, Zi-Xuan; Cannuscio, Carolyn C.; Strelau, Katherine M.; Jaskowiak-Barr, Anne; Cressman, Leigh; Loughrey, Sean; Ganguly, Arupa; Feldman, Michael D.; Collman, Ronald G.; Rodino, Kyle G.; Kelly, Brendan J.; Bushman, Frederic D. |
SARS-CoV-2 variants associated with vaccine breakthrough in the Delaware Valley through summer 2021 |
preprint |
10.1101/2021.10.18.21264623 |
| 2020 |
Richard-Greenblatt, Melissa; Ziegler, Matthew J.; Bromberg, Valerie; Huang, Elizabeth; Abdallah, Hatem; Tolomeo, Pam; Lautenbach, Ebbing; Glaser, Laurel; Kelly, Brendan J. |
Impact of Nasopharyngeal Specimen Quality on SARS-CoV-2 Test Sensitivity |
preprint |
10.1101/2020.12.09.20246520 |